In a medium bowl, mix flours, salt, and zest together. Make sure to zest the orange with a fine grater. This will give you a cookie with small bits of zest evenly distributed in the cookie instead of long strands.
In a stand mixer or separate bowl, cream butter and sugars together. Add extracts and mix well. Add flour mixture and once well incorporated, add chocolate chips.
Put dough on parchment paper or plastic wrap and roll out to a ½" log. Wrap well and chill in refrigerator for at least 1 hour.
Preheat oven to 325°F. Line large baking sheet with parchment paper. Remove cookie dough from refrigerator and slice ¼" thick. Evenly spread out on cookie sheet (leave about 2" of space between cookies since dough will spread) and bake for 17-19 minutes. You will know they are done when the edges and bottom of the cookie are light brown.
Let cool in the pan on a cooling rack for 5-10 minutes, then transfer to baking rack to continue to cool. Enjoy!